/EXTERNAL Roadmap/methylation/K006500_K006501_2_lane_gembs
BACK
SAMPLE K006500_K006501_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26902401 |
23811433 |
88.51 % |
| NonRefCpG |
229259 |
184324 |
80.40 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5184735 |
9.76 % |
4466293 |
9.26 % |
21702 |
4.97 % |
11728 |
3.14 % |
| Intermediate (0.3-0.7) |
3726954 |
7.01 % |
3070410 |
6.37 % |
37179 |
8.51 % |
23538 |
6.30 % |
| Methylated (0.7-1) |
44228965 |
83.23 % |
40676471 |
84.37 % |
378087 |
86.52 % |
338208 |
90.56 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.920 |
|
0.920 |
|
0.920 |
|
0.930 |
|