/EXTERNAL Roadmap/K006502_K006503_K006504_K006505_4_lane_gembs

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SAMPLE K006502_K006503_K006504_K006505_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3873244334 100.00 % 1936622167 100.00 % 1936622167 100.00 %
General Reads 3758847897 97.05 % 1883203469 97.24 % 1875644428 96.85 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 1 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 114396435 2.95 % 53418697 2.76 % 60977738 3.15 %
Bisulfite_reads C2T 1972080233 50.92 % 988216605 51.03 % 983863628 50.80 %
Bisulfite_reads G2A 1786767666 46.13 % 894986865 46.21 % 891780801 46.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1309350385
Average Unique 67.61 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 139666250716 35.70 % 55104498923 28.17 % 84561751793 43.23 %
Base Counts Overall C 54925897424 14.04 % 4243220992 2.17 % 50682676432 25.91 %
Base Counts Overall G 56056394782 14.33 % 51730714256 26.45 % 4325680526 2.21 %
Base Counts Overall T 136585635480 34.91 % 82571780588 42.21 % 54013854892 27.61 %
Base Counts Overall N 3963499332 1.01 % 1948624108 1.00 % 2014875224 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1706063568



Mapping Quality

Mapping Quality Histogram
K006502_K006503_K006504_K006505_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006502_K006503_K006504_K006505_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
SRX259094_2_lanes
SRX259066_3_lanes
SRX259095_2_lanes
SRX259065_4_lanes