/EXTERNAL Roadmap/K006506_1_lane_gembs/SRX175355_14_lanes

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SAMPLE K006506_1_lane_gembs LANE SRX175355_14_lanes

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2743280965 100.00 % 2743280965 100.00 % 0 0.00 %
General Reads 2685851270 97.91 % 2685851270 97.91 % 0 0.00 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9344729 0.34 % 9344729 0.34 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 48084966 1.75 % 48084966 1.75 % 0 0.00 %
Bisulfite_reads C2T 1366628045 49.82 % 1366628045 49.82 % 0 0.00 %
Bisulfite_reads G2A 1328567954 48.43 % 1328567954 48.43 % 0 0.00 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 2319245952
Average Unique 86.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 84507565740 30.38 %
Base Counts Overall C 2628000625 0.94 %
Base Counts Overall G 61483901209 22.10 %
Base Counts Overall T 126253852472 45.39 %
Base Counts Overall N 3295779255 1.18 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9956216606623294
Over Conversion Rate NA



Mapping Quality

Mapping Quality Histogram
SRX175355_14_lanes.mapq.png



Read Length

Read Length Reads
101 1097721836
100 1645559129