/EXTERNAL Roadmap/mapping_coverage/K006506_1_lane_gembs
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SAMPLE K006506_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
4351759226 |
100% |
268145147133 |
100% |
| Mapped |
4351759226 |
100.00 % |
268145147133 |
100.00 % |
| Passed |
3349910123 |
76.98 % |
235431223192 |
87.80 % |
| NotPassed |
1001849103 |
23.02 % |
32713923941 |
12.20 % |
| |
|
|
|
|
| LowMAPQ |
325487387 |
7.48 % |
32713923941 |
12.20 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
676361716 |
15.54 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
168989936037 |
100% |
| Passed |
155862429473 |
92.23 % |
| Trimmed |
8372177861 |
4.95 % |
| Clipped |
223238032 |
0.13 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
4532090671 |
2.68 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |