/EXTERNAL Roadmap/methylation/K006506_1_lane_gembs

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SAMPLE K006506_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26973906 23756171 88.07 %
NonRefCpG 241584 192601 79.72 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006506_1_lane_gembs_coverage_refCpG.png ./IMG//K006506_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006506_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006506_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006506_1_lane_gembs_quality_refcpg.png ./IMG//K006506_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006506_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5698570 10.70 % 5037017 10.45 % 27281 5.92 % 15657 3.98 %
Intermediate (0.3-0.7) 8613228 16.17 % 7638588 15.85 % 86596 18.78 % 68739 17.49 %
Methylated (0.7-1) 38957360 73.13 % 35524412 73.70 % 347249 75.30 % 308638 78.53 %
Median Methylation 0.840 0.850 0.840 0.850