/EXTERNAL Roadmap/mapping_coverage/K006507_K006508_K006509_K006510_K006511_K006512_6_lane_gembs
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SAMPLE K006507_K006508_K006509_K006510_K006511_K006512_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3356509517 |
100% |
176262147070 |
100% |
| Mapped |
3356509517 |
100.00 % |
176262147070 |
100.00 % |
| Passed |
2411376693 |
71.84 % |
132654395577 |
75.26 % |
| NotPassed |
945132824 |
28.16 % |
43607751493 |
24.74 % |
| |
|
|
|
|
| LowMAPQ |
529566650 |
15.78 % |
43607751493 |
24.74 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
415566174 |
12.38 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99578134378 |
100% |
| Passed |
86261022924 |
86.63 % |
| Trimmed |
5937081503 |
5.96 % |
| Clipped |
576673562 |
0.58 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
6803356389 |
6.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |