/EXTERNAL Roadmap/methylation/K006507_K006508_K006509_K006510_K006511_K006512_6_lane_gembs
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SAMPLE K006507_K006508_K006509_K006510_K006511_K006512_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26609370 |
20943968 |
78.71 % |
| NonRefCpG |
331479 |
168663 |
50.88 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4932446 |
9.53 % |
3969865 |
9.30 % |
121571 |
20.00 % |
30663 |
7.84 % |
| Intermediate (0.3-0.7) |
6286827 |
12.15 % |
4494898 |
10.53 % |
107689 |
17.72 % |
56131 |
14.35 % |
| Methylated (0.7-1) |
40519277 |
78.32 % |
34239717 |
80.18 % |
378609 |
62.28 % |
304240 |
77.80 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.880 |
|
0.810 |
|
0.870 |
|