{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 38206696, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36148337, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.61, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 37698831, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 36694414, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.34, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 28405422, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 1385032, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.048759
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 27551809, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 229035, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.008313
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 28403706, 
            "distinct_read_pairs": 27113723, 
            "one_read_pair": 25906048, 
            "two_read_pair": 1131959, 
            "NRF": 0.954584, 
            "PBC1": 0.955459, 
            "PBC2": 22.88603
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 27528393, 
            "distinct_read_pairs": 27323927, 
            "one_read_pair": 27132721, 
            "two_read_pair": 188377, 
            "NRF": 0.992573, 
            "PBC1": 0.993002, 
            "PBC2": 144.03415
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 27020390, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 27020390, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 27322774, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 27322774, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 109473, 
        "Np": 0, 
        "N_opt": 109473, 
        "N_consv": 109473, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 175, 
            "corr_est_frag_len": 0.242785734229731, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.2389329, 
            "argmin_corr": 1500, 
            "min_corr": 0.20206, 
            "NSC": 1.201553, 
            "RSC": 1.10449
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.584820771952
        }, 
        "rep1-pr1": {
            "FRiP": 0.555446800078
        }, 
        "rep1-pr2": {
            "FRiP": 0.5555476187
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.551833688654
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.104115422966, 
            "auc": 0.488730732474, 
            "ch_div": 0.315574180185, 
            "elbow_pt": 1.2395601224e-66, 
            "jsd": 0.848898583293, 
            "syn_auc": 0.495203775482, 
            "syn_elbow_pt": 0.425246955062, 
            "syn_jsd": 0.537725045661
        }
    ]
}
