/EXTERNAL Roadmap/mapping_coverage/K006516_K006517_K006518_K006519_K006520_5_lane_gembs
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SAMPLE K006516_K006517_K006518_K006519_K006520_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
6559297132 |
100% |
419318464798 |
100% |
| Mapped |
6559297132 |
100.00 % |
419318464798 |
100.00 % |
| Passed |
4714588595 |
71.88 % |
367326812345 |
87.60 % |
| NotPassed |
1844708537 |
28.12 % |
51991652453 |
12.40 % |
| |
|
|
|
|
| LowMAPQ |
519745238 |
7.92 % |
51991652453 |
12.40 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
1324963299 |
20.20 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
236961209855 |
100% |
| Passed |
218449323830 |
92.19 % |
| Trimmed |
11790987319 |
4.98 % |
| Clipped |
266560420 |
0.11 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
6454338286 |
2.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |