/EXTERNAL Roadmap/K006538_K006539_2_lane_gembs

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SAMPLE K006538_K006539_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2558154664 100.00 % 1279077332 100.00 % 1279077332 100.00 %
General Reads 2481792712 97.01 % 1244952612 97.33 % 1236840100 96.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 155 0.00 % 80 0.00 % 75 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 76361797 2.99 % 34124640 2.67 % 42237157 3.30 %
Bisulfite_reads C2T 1304124248 50.98 % 654320418 51.16 % 649803830 50.80 %
Bisulfite_reads G2A 1177668619 46.04 % 590632274 46.18 % 587036345 45.90 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 840065540
Average Unique 65.68 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 92578604681 35.83 % 36890511814 28.56 % 55688092867 43.11 %
Base Counts Overall C 35877557542 13.89 % 2653046135 2.05 % 33224511407 25.72 %
Base Counts Overall G 36776227150 14.23 % 34081819758 26.38 % 2694407392 2.09 %
Base Counts Overall T 90435157747 35.00 % 54253188590 42.00 % 36181969157 28.01 %
Base Counts Overall N 2706073944 1.05 % 1308244235 1.01 % 1397829709 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate -0.008368765503535712
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1117909729



Mapping Quality

Mapping Quality Histogram
K006538_K006539_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006538_K006539_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
SRX259084_4_lanes
SRX259087_3_lanes