/EXTERNAL Roadmap/mapping_coverage/K006538_K006539_2_lane_gembs
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SAMPLE K006538_K006539_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2453901043 |
100% |
217256656799 |
100% |
| Mapped |
2422447924 |
98.72 % |
214111344899 |
98.55 % |
| Passed |
1652304118 |
67.33 % |
137096964299 |
63.10 % |
| NotPassed |
770143806 |
31.38 % |
77014380600 |
35.45 % |
| |
|
|
|
|
| LowMAPQ |
663828032 |
27.05 % |
66382803200 |
30.56 % |
| MateUnmapped |
31453119 |
1.28 % |
3145311900 |
1.45 % |
| Duplicate |
28037761 |
1.14 % |
2803776100 |
1.29 % |
| BadOrientation |
132 |
0.00 % |
13200 |
0.00 % |
| LargeInsertSize |
3545850 |
0.14 % |
354585000 |
0.16 % |
| |
|
|
|
|
| NotCorrectlyAligned |
74732031 |
3.05 % |
7473203100 |
3.44 % |
| Unmapped |
31453119 |
1.28 % |
3145311900 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
165223498800 |
100% |
| Passed |
128240990946 |
77.62 % |
| Trimmed |
6631182561 |
4.01 % |
| Clipped |
973601860 |
0.59 % |
| Overlapping |
27152932641 |
16.43 % |
| LowQuality |
2224790792 |
1.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |