/EXTERNAL Roadmap/methylation/K006538_K006539_2_lane_gembs
BACK
SAMPLE K006538_K006539_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26956149 |
22324124 |
82.82 % |
| NonRefCpG |
362191 |
169523 |
46.80 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5130127 |
9.92 % |
4532322 |
10.05 % |
147109 |
22.16 % |
36338 |
9.00 % |
| Intermediate (0.3-0.7) |
5680379 |
10.99 % |
4205428 |
9.33 % |
123846 |
18.66 % |
58875 |
14.59 % |
| Methylated (0.7-1) |
40889597 |
79.09 % |
36352014 |
80.62 % |
392795 |
59.18 % |
308435 |
76.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.880 |
|
0.890 |
|
0.790 |
|
0.870 |
|