{
    "name": "Histone ChIP-Seq SE ENCSR438BEX with input ENCSR491DRJ", 
    "desc": "Histone ChIP-Seq SE ENCSR438BEX with input ENCSR491DRJ", 
    "flagstat_qc": [
        {
            "total": 32149003, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 30869799, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.02, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 45828042, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 44578663, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.27, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 22887320, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 973849, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.04255
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 33433614, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 539476, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.016136
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 22874154, 
            "distinct_read_pairs": 22017622, 
            "one_read_pair": 21199445, 
            "two_read_pair": 788572, 
            "NRF": 0.962555, 
            "PBC1": 0.96284, 
            "PBC2": 26.883335
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 33382710, 
            "distinct_read_pairs": 32935405, 
            "one_read_pair": 32506684, 
            "two_read_pair": 421824, 
            "NRF": 0.986601, 
            "PBC1": 0.986983, 
            "PBC2": 77.062197
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 21913471, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 21913471, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 32894138, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32894138, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 23425, 
        "Np": 0, 
        "N_opt": 23425, 
        "N_consv": 23425, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 220, 
            "corr_est_frag_len": 0.181204506465077, 
            "phantom_peak": 35, 
            "corr_phantom_peak": 0.2028775, 
            "argmin_corr": 1500, 
            "min_corr": 0.1744954, 
            "NSC": 1.038449, 
            "RSC": 0.2363852
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.0908667193104
        }, 
        "rep1-pr1": {
            "FRiP": 0.0798168371652
        }, 
        "rep1-pr2": {
            "FRiP": 0.0801526393476
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0707951435956
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.256122206033, 
            "auc": 0.48746731989, 
            "ch_div": 0.173293693795, 
            "elbow_pt": 1.08396251243e-53, 
            "jsd": 0.582311355648, 
            "syn_auc": 0.49503530128, 
            "syn_elbow_pt": 0.108035392588, 
            "syn_jsd": 0.264164335319
        }
    ]
}