/EXTERNAL Roadmap/mapping_coverage/K006521_K006522_K006523_3_lane_gembs
BACK
SAMPLE K006521_K006522_K006523_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
6187625060 |
100% |
392709351336 |
100% |
| Mapped |
6187625060 |
100.00 % |
392709351336 |
100.00 % |
| Passed |
4511357661 |
72.91 % |
338957741582 |
86.31 % |
| NotPassed |
1676267399 |
27.09 % |
53751609754 |
13.69 % |
| |
|
|
|
|
| LowMAPQ |
536366904 |
8.67 % |
53751609754 |
13.69 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
1139900495 |
18.42 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
227057748072 |
100% |
| Passed |
210081582807 |
92.52 % |
| Trimmed |
11275612451 |
4.97 % |
| Clipped |
321971804 |
0.14 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5378581010 |
2.37 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |