/EXTERNAL Roadmap/methylation/K006521_K006522_K006523_3_lane_gembs
BACK
SAMPLE K006521_K006522_K006523_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26857926 |
24000136 |
89.36 % |
| NonRefCpG |
151322 |
107329 |
70.93 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5717502 |
10.77 % |
5315805 |
10.98 % |
18137 |
6.29 % |
9587 |
4.14 % |
| Intermediate (0.3-0.7) |
8641501 |
16.27 % |
7848482 |
16.22 % |
55184 |
19.14 % |
40091 |
17.32 % |
| Methylated (0.7-1) |
38740406 |
72.96 % |
35237100 |
72.80 % |
214966 |
74.57 % |
181753 |
78.53 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.850 |
|
0.840 |
|
0.860 |
|