/EXTERNAL Roadmap/mapping_coverage/K006540_K006541_2_lane_gembs
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SAMPLE K006540_K006541_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1635180928 |
100% |
94010787793 |
100% |
| Mapped |
1635180928 |
100.00 % |
94010787793 |
100.00 % |
| Passed |
1395073217 |
85.32 % |
81543834782 |
86.74 % |
| NotPassed |
240107711 |
14.68 % |
12466953011 |
13.26 % |
| |
|
|
|
|
| LowMAPQ |
124089505 |
7.59 % |
12466953011 |
13.26 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
116018206 |
7.10 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
70377017011 |
100% |
| Passed |
60984992823 |
86.65 % |
| Trimmed |
3431266885 |
4.88 % |
| Clipped |
395595451 |
0.56 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5565161852 |
7.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |