/EXTERNAL Roadmap/methylation/K006540_K006541_2_lane_gembs
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SAMPLE K006540_K006541_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26699584 |
20568583 |
77.04 % |
| NonRefCpG |
393730 |
163654 |
41.57 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4756887 |
9.26 % |
2760013 |
6.46 % |
185334 |
25.85 % |
43233 |
9.99 % |
| Intermediate (0.3-0.7) |
8373464 |
16.30 % |
6065683 |
14.19 % |
150881 |
21.04 % |
82995 |
19.18 % |
| Methylated (0.7-1) |
38245392 |
74.44 % |
33909290 |
79.35 % |
380857 |
53.11 % |
306501 |
70.83 % |
| |
|
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|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.860 |
|
0.730 |
|
0.840 |
|