/EXTERNAL Roadmap/K006524_1_lane_gembs/SRX248145_4_lanes
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1596747948 | 100.00 % | 798373974 | 100.00 % | 798373974 | 100.00 % |
| General Reads | 1476493564 | 92.47 % | 740059098 | 92.70 % | 736434466 | 92.24 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 14338511 | 0.90 % | 7198231 | 0.90 % | 7140280 | 0.89 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 105915873 | 6.63 % | 51116645 | 6.40 % | 54799228 | 6.86 % |
| Bisulfite_reads C2T | 760246966 | 47.61 % | 381108111 | 47.74 % | 379138855 | 47.49 % |
| Bisulfite_reads G2A | 730585109 | 45.75 % | 366149218 | 45.86 % | 364435891 | 45.65 % |
| Concept | Value |
|---|---|
| Unique Fragments | 436333673 |
| Average Unique | 54.65 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 61155747052 | 37.92 % | 27629728374 | 34.26 % | 33526018678 | 41.58 % |
| Base Counts Overall C | 17706216491 | 10.98 % | 1895648610 | 2.35 % | 15810567881 | 19.61 % |
| Base Counts Overall G | 20811543657 | 12.90 % | 17648453354 | 21.89 % | 3163090303 | 3.92 % |
| Base Counts Overall T | 59456466072 | 36.87 % | 32349024209 | 40.12 % | 27107441863 | 33.62 % |
| Base Counts Overall N | 2141569476 | 1.33 % | 1112916827 | 1.38 % | 1028652649 | 1.28 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9589350587671313 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 519051043 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 100 | 798373974 |
| 100 | 798373974 |
| Insert Size Histogram |
|---|
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