/EXTERNAL Roadmap/mapping_coverage/K006524_1_lane_gembs
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SAMPLE K006524_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1461070659 |
100% |
126338180492 |
100% |
| Mapped |
1415786279 |
96.90 % |
121809742492 |
96.42 % |
| Passed |
847430183 |
58.00 % |
64974132892 |
51.43 % |
| NotPassed |
568356096 |
38.90 % |
56835609600 |
44.99 % |
| |
|
|
|
|
| LowMAPQ |
498951162 |
34.15 % |
49895116200 |
39.49 % |
| MateUnmapped |
45284380 |
3.10 % |
4528438000 |
3.58 % |
| Duplicate |
17231216 |
1.18 % |
1723121600 |
1.36 % |
| BadOrientation |
730 |
0.00 % |
73000 |
0.00 % |
| LargeInsertSize |
72226 |
0.00 % |
7222600 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
52100762 |
3.57 % |
5210076200 |
4.12 % |
| Unmapped |
45284380 |
3.10 % |
4528438000 |
3.58 % |
Base Level Counts
| Bases |
# |
% |
| Total |
84716964200 |
100% |
| Passed |
59755485285 |
70.54 % |
| Trimmed |
3504518943 |
4.14 % |
| Clipped |
801679570 |
0.95 % |
| Overlapping |
18941151738 |
22.36 % |
| LowQuality |
1714128664 |
2.02 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |