/EXTERNAL Roadmap/methylation/K006524_1_lane_gembs

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SAMPLE K006524_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26495428 14617097 55.17 %
NonRefCpG 347977 131362 37.75 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006524_1_lane_gembs_coverage_refCpG.png ./IMG//K006524_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006524_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006524_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006524_1_lane_gembs_quality_refcpg.png ./IMG//K006524_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006524_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5131433 10.43 % 1291734 4.07 % 132777 20.98 % 27519 8.20 %
Intermediate (0.3-0.7) 11850681 24.10 % 5880122 18.52 % 159594 25.22 % 68770 20.50 %
Methylated (0.7-1) 32198141 65.47 % 24577341 77.41 % 340530 53.80 % 239236 71.30 %
Median Methylation 0.810 0.860 0.730 0.840