/EXTERNAL Roadmap/methylation/K006525_K006526_K006527_K006528_K006529_5_lane_gembs
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SAMPLE K006525_K006526_K006527_K006528_K006529_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26804227 |
22319488 |
83.27 % |
| NonRefCpG |
347452 |
179844 |
51.76 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4999580 |
9.61 % |
4089481 |
9.05 % |
144197 |
22.44 % |
41821 |
9.63 % |
| Intermediate (0.3-0.7) |
5461169 |
10.49 % |
4081528 |
9.03 % |
106480 |
16.57 % |
61444 |
14.14 % |
| Methylated (0.7-1) |
41590685 |
79.90 % |
37036126 |
81.93 % |
391839 |
60.99 % |
331239 |
76.23 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.890 |
|
0.890 |
|
0.810 |
|
0.880 |
|