{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 81713671, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 50562479, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 61.88, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 35643447, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 30490485, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 85.54, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 36664611, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 5909196, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.161169
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 23787802, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 498336, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.020949
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 36651557, 
            "distinct_read_pairs": 31801584, 
            "one_read_pair": 27975623, 
            "two_read_pair": 3072878, 
            "NRF": 0.867673, 
            "PBC1": 0.879693, 
            "PBC2": 9.104046
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 23765198, 
            "distinct_read_pairs": 23321286, 
            "one_read_pair": 22903741, 
            "two_read_pair": 401705, 
            "NRF": 0.981321, 
            "PBC1": 0.982096, 
            "PBC2": 57.01632
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 30755415, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 30755415, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 23289466, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 23289466, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 41437, 
        "Np": 0, 
        "N_opt": 41437, 
        "N_consv": 41437, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 125, 
            "corr_est_frag_len": 0.308688600802409, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.2795227, 
            "argmin_corr": 1500, 
            "min_corr": 0.157743, 
            "NSC": 1.956908, 
            "RSC": 1.239497
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.356253177977
        }, 
        "rep1-pr1": {
            "FRiP": 0.373187884272
        }, 
        "rep1-pr2": {
            "FRiP": 0.373160590339
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.347651487989
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.151732180698, 
            "auc": 0.48941710074, 
            "ch_div": 0.218699892437, 
            "elbow_pt": 1.0835812313e-75, 
            "jsd": 0.747357919444, 
            "syn_auc": 0.496016759163, 
            "syn_elbow_pt": 0.362406643823, 
            "syn_jsd": 0.479192809673
        }
    ]
}
