/EXTERNAL Roadmap/mapping_coverage/K006542_K006543_K006544_K006545_4_lane_gembs
BACK
SAMPLE K006542_K006543_K006544_K006545_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2520815085 |
100% |
139729528821 |
100% |
| Mapped |
2520815085 |
100.00 % |
139729528821 |
100.00 % |
| Passed |
2039595516 |
80.91 % |
120130556754 |
85.97 % |
| NotPassed |
481219569 |
19.09 % |
19598972067 |
14.03 % |
| |
|
|
|
|
| LowMAPQ |
210379481 |
8.35 % |
19598972067 |
14.03 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
270840088 |
10.74 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
95365300489 |
100% |
| Passed |
86005754675 |
90.19 % |
| Trimmed |
5072582495 |
5.32 % |
| Clipped |
240257984 |
0.25 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
4046705335 |
4.24 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |