/EXTERNAL Roadmap/methylation/K006542_K006543_K006544_K006545_4_lane_gembs
BACK
SAMPLE K006542_K006543_K006544_K006545_4_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26898645 |
22049908 |
81.97 % |
| NonRefCpG |
356578 |
176923 |
49.62 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4976564 |
9.54 % |
3873075 |
8.64 % |
152571 |
23.10 % |
40745 |
9.34 % |
| Intermediate (0.3-0.7) |
6889918 |
13.21 % |
5270784 |
11.75 % |
122639 |
18.57 % |
72728 |
16.67 % |
| Methylated (0.7-1) |
40280609 |
77.24 % |
35706135 |
79.61 % |
385346 |
58.34 % |
322749 |
73.99 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.860 |
|
0.860 |
|
0.780 |
|
0.850 |
|