/EXTERNAL Roadmap/mapping_coverage/K006546_K006547_2_lane_gembs
BACK
SAMPLE K006546_K006547_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2022822833 |
100% |
112573535412 |
100% |
| Mapped |
2022822833 |
100.00 % |
112573535412 |
100.00 % |
| Passed |
1673507329 |
82.73 % |
96314350116 |
85.56 % |
| NotPassed |
349315504 |
17.27 % |
16259185296 |
14.44 % |
| |
|
|
|
|
| LowMAPQ |
171537994 |
8.48 % |
16259185296 |
14.44 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
177777510 |
8.79 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79976628698 |
100% |
| Passed |
70152116358 |
87.72 % |
| Trimmed |
4142520202 |
5.18 % |
| Clipped |
310702670 |
0.39 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
5371289468 |
6.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |