/EXTERNAL Roadmap/methylation/K006546_K006547_2_lane_gembs
BACK
SAMPLE K006546_K006547_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26823265 |
21128075 |
78.77 % |
| NonRefCpG |
360163 |
170755 |
47.41 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4878328 |
9.40 % |
3163501 |
7.26 % |
156298 |
23.47 % |
39370 |
9.22 % |
| Intermediate (0.3-0.7) |
7625343 |
14.70 % |
5616534 |
12.90 % |
129909 |
19.51 % |
74344 |
17.41 % |
| Methylated (0.7-1) |
39377295 |
75.90 % |
34764911 |
79.84 % |
379752 |
57.02 % |
313378 |
73.37 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.870 |
|
0.760 |
|
0.850 |
|