{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 131240258, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 127944327, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.49, 
            "paired": 131240258, 
            "paired_qc_failed": 0, 
            "read1": 65620129, 
            "read1_qc_failed": 0, 
            "read2": 65620129, 
            "read2_qc_failed": 0, 
            "paired_properly": 126613634, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.47, 
            "with_itself": 127423804, 
            "with_itself_qc_failed": 0, 
            "singletons": 520523, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.4, 
            "diff_chroms": 510100, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 91936088, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 86108967, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 93.66, 
            "paired": 91936088, 
            "paired_qc_failed": 0, 
            "read1": 45968044, 
            "read1_qc_failed": 0, 
            "read2": 45968044, 
            "read2_qc_failed": 0, 
            "paired_properly": 74610692, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 81.15, 
            "with_itself": 83414092, 
            "with_itself_qc_failed": 0, 
            "singletons": 2694875, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.93, 
            "diff_chroms": 6003117, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 58690153, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 365095, 
            "paired_opt_dupes": 2220, 
            "dupes_pct": 0.006221
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 28516779, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 321586, 
            "paired_opt_dupes": 641, 
            "dupes_pct": 0.011277
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 58682937, 
            "distinct_read_pairs": 58317884, 
            "one_read_pair": 57955028, 
            "two_read_pair": 360677, 
            "NRF": 0.993779, 
            "PBC1": 0.993778, 
            "PBC2": 160.684014
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 28515658, 
            "distinct_read_pairs": 28194090, 
            "one_read_pair": 27875944, 
            "two_read_pair": 314754, 
            "NRF": 0.988723, 
            "PBC1": 0.988716, 
            "PBC2": 88.564225
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 116650116, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 116650116, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 116650116, 
            "paired_qc_failed": 0, 
            "read1": 58325058, 
            "read1_qc_failed": 0, 
            "read2": 58325058, 
            "read2_qc_failed": 0, 
            "paired_properly": 116650116, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 116650116, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 56390386, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 56390386, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 56390386, 
            "paired_qc_failed": 0, 
            "read1": 28195193, 
            "read1_qc_failed": 0, 
            "read2": 28195193, 
            "read2_qc_failed": 0, 
            "paired_properly": 56390386, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 56390386, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 172475, 
        "Np": 0, 
        "N_opt": 172475, 
        "N_consv": 172475, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.203308100232473, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2005326, 
            "argmin_corr": 1500, 
            "min_corr": 0.1876926, 
            "NSC": 1.083197, 
            "RSC": 1.216158
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.295095754846
        }, 
        "rep1-pr1": {
            "FRiP": 0.308200842815
        }, 
        "rep1-pr2": {
            "FRiP": 0.308395637263
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.267503627189
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.169408049878, 
            "auc": 0.496236252081, 
            "ch_div": 0.162903445077, 
            "elbow_pt": 0.0, 
            "jsd": 0.72108510332, 
            "syn_auc": 0.506914566179, 
            "syn_elbow_pt": 0.131331921237, 
            "syn_jsd": 0.455660577192
        }
    ]
}
