/cemt/mapping_coverage/A54762_3_lane_gembs
BACK
SAMPLE A54762_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1287751945 |
100% |
139202435634 |
100% |
| Mapped |
1273195448 |
98.87 % |
137382873509 |
98.69 % |
| Passed |
870330422 |
67.59 % |
87024745259 |
62.52 % |
| NotPassed |
402865026 |
31.28 % |
50358128250 |
36.18 % |
| |
|
|
|
|
| LowMAPQ |
294619052 |
22.88 % |
36827381500 |
26.46 % |
| MateUnmapped |
14556497 |
1.13 % |
1819562125 |
1.31 % |
| Duplicate |
35715407 |
2.77 % |
4464425875 |
3.21 % |
| BadOrientation |
1726 |
0.00 % |
215750 |
0.00 % |
| LargeInsertSize |
53132 |
0.00 % |
6641500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
72475709 |
5.63 % |
9059463625 |
6.51 % |
| Unmapped |
14556497 |
1.13 % |
1819562125 |
1.31 % |
Base Level Counts
| Bases |
# |
% |
| Total |
108761557875 |
100% |
| Passed |
82692357868 |
76.03 % |
| Trimmed |
3791269766 |
3.49 % |
| Clipped |
301760304 |
0.28 % |
| Overlapping |
21435052312 |
19.71 % |
| LowQuality |
541117625 |
0.50 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |