/cemt/methylation/A54762_3_lane_gembs

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SAMPLE A54762_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26204683 13706311 52.30 %
NonRefCpG 417816 141234 33.80 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54762_3_lane_gembs_coverage_refCpG.png ./IMG//A54762_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54762_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54762_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54762_3_lane_gembs_quality_refcpg.png ./IMG//A54762_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54762_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3661721 7.65 % 765794 2.66 % 174358 23.23 % 26407 7.60 %
Intermediate (0.3-0.7) 10162149 21.24 % 4146859 14.42 % 176965 23.58 % 57600 16.58 %
Methylated (0.7-1) 34017269 71.10 % 23852116 82.92 % 399261 53.19 % 263300 75.81 %
Median Methylation 0.840 0.890 0.730 0.870