/CEMT/mapping_coverage/A54772_3_lane_gembs
BACK
SAMPLE A54772_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1453618376 |
100% |
158268582782 |
100% |
| Mapped |
1440704457 |
99.11 % |
156654342907 |
98.98 % |
| Passed |
1071807224 |
73.73 % |
110542188782 |
69.84 % |
| NotPassed |
368897233 |
25.38 % |
46112154125 |
29.14 % |
| |
|
|
|
|
| LowMAPQ |
283555102 |
19.51 % |
35444387750 |
22.40 % |
| MateUnmapped |
12913919 |
0.89 % |
1614239875 |
1.02 % |
| Duplicate |
19803543 |
1.36 % |
2475442875 |
1.56 % |
| BadOrientation |
980 |
0.00 % |
122500 |
0.00 % |
| LargeInsertSize |
29036 |
0.00 % |
3629500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
65508572 |
4.51 % |
8188571500 |
5.17 % |
| Unmapped |
12913919 |
0.89 % |
1614239875 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
133950486500 |
100% |
| Passed |
105220278154 |
78.55 % |
| Trimmed |
4760928916 |
3.55 % |
| Clipped |
382078914 |
0.29 % |
| Overlapping |
23026218804 |
17.19 % |
| LowQuality |
560981712 |
0.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |