/CEMT/methylation/A54772_3_lane_gembs

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SAMPLE A54772_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26511091 15555863 58.68 %
NonRefCpG 343733 149702 43.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54772_3_lane_gembs_coverage_refCpG.png ./IMG//A54772_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54772_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54772_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54772_3_lane_gembs_quality_refcpg.png ./IMG//A54772_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54772_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5721841 11.46 % 1813051 5.36 % 128320 20.29 % 30109 8.31 %
Intermediate (0.3-0.7) 12151111 24.33 % 6514331 19.25 % 160589 25.39 % 74261 20.50 %
Methylated (0.7-1) 32060669 64.21 % 25508776 75.39 % 343615 54.32 % 257818 71.18 %
Median Methylation 0.800 0.850 0.740 0.840