/cemt/mapping_coverage/A54771_3_lane_gembs
BACK
SAMPLE A54771_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1351098956 |
100% |
147190556912 |
100% |
| Mapped |
1338928505 |
99.10 % |
145669250537 |
98.97 % |
| Passed |
980892261 |
72.60 % |
100914720037 |
68.56 % |
| NotPassed |
358036244 |
26.50 % |
44754530500 |
30.41 % |
| |
|
|
|
|
| LowMAPQ |
284025532 |
21.02 % |
35503191500 |
24.12 % |
| MateUnmapped |
12170451 |
0.90 % |
1521306375 |
1.03 % |
| Duplicate |
17142700 |
1.27 % |
2142837500 |
1.46 % |
| BadOrientation |
970 |
0.00 % |
121250 |
0.00 % |
| LargeInsertSize |
33372 |
0.00 % |
4171500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
56833670 |
4.21 % |
7104208750 |
4.83 % |
| Unmapped |
12170451 |
0.90 % |
1521306375 |
1.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
122585445375 |
100% |
| Passed |
95990722777 |
78.31 % |
| Trimmed |
4362094655 |
3.56 % |
| Clipped |
384133485 |
0.31 % |
| Overlapping |
21286591853 |
17.36 % |
| LowQuality |
561902605 |
0.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |