/cemt/methylation/A54771_3_lane_gembs

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SAMPLE A54771_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26454334 14835397 56.08 %
NonRefCpG 344594 143020 41.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54771_3_lane_gembs_coverage_refCpG.png ./IMG//A54771_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54771_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54771_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54771_3_lane_gembs_quality_refcpg.png ./IMG//A54771_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54771_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6100451 12.27 % 1927621 5.92 % 133283 21.05 % 31146 8.91 %
Intermediate (0.3-0.7) 12442777 25.02 % 6420982 19.72 % 165276 26.11 % 73902 21.15 %
Methylated (0.7-1) 31194252 62.72 % 24214043 74.36 % 334506 52.84 % 244411 69.94 %
Median Methylation 0.790 0.850 0.720 0.830