/cemt/A54768_3_lane_gembs

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SAMPLE A54768_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1497337218 100.00 % 748668609 100.00 % 748668609 100.00 %
General Reads 1441769029 96.29 % 722644639 96.52 % 719124390 96.05 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 37618637 2.51 % 18822685 2.51 % 18795952 2.51 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17949552 1.20 % 7201285 0.96 % 10748267 1.44 %
Bisulfite_reads C2T 754500200 50.39 % 378068830 50.50 % 376431370 50.28 %
Bisulfite_reads G2A 724887466 48.41 % 363398494 48.54 % 361488972 48.28 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 538697707
Average Unique 71.95 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74514677734 39.50 % 35041524304 37.15 % 39473153430 41.84 %
Base Counts Overall C 19446516626 10.31 % 856255237 0.91 % 18590261389 19.71 %
Base Counts Overall G 20002526188 10.60 % 18898656783 20.03 % 1103869405 1.17 %
Base Counts Overall T 73097969909 38.74 % 38780619928 41.11 % 34317349981 36.38 %
Base Counts Overall N 1602799011 0.85 % 755188482 0.80 % 847610529 0.90 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9939178687688591
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 622883980



Mapping Quality

Mapping Quality Histogram
A54768_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54768_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7NTCANXX_1_1
C7NYNANXX_8_1
C7NYNANXX_7_1