/cemt/mapping_coverage/A54768_3_lane_gembs
BACK
SAMPLE A54768_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1419026060 |
100% |
156248286262 |
100% |
| Mapped |
1406547861 |
99.12 % |
154688511387 |
99.00 % |
| Passed |
1006754042 |
70.95 % |
104714284012 |
67.02 % |
| NotPassed |
399793819 |
28.17 % |
49974227375 |
31.98 % |
| |
|
|
|
|
| LowMAPQ |
291246804 |
20.52 % |
36405850500 |
23.30 % |
| MateUnmapped |
12478199 |
0.88 % |
1559774875 |
1.00 % |
| Duplicate |
23170841 |
1.63 % |
2896355125 |
1.85 % |
| BadOrientation |
1144 |
0.00 % |
143000 |
0.00 % |
| LargeInsertSize |
58646 |
0.00 % |
7330750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
85316384 |
6.01 % |
10664548000 |
6.83 % |
| Unmapped |
12478199 |
0.88 % |
1559774875 |
1.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
125820293875 |
100% |
| Passed |
99634561480 |
79.19 % |
| Trimmed |
4505353414 |
3.58 % |
| Clipped |
313417139 |
0.25 % |
| Overlapping |
20792592724 |
16.53 % |
| LowQuality |
574369118 |
0.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |