/cemt/methylation/A54768_3_lane_gembs

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SAMPLE A54768_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26233883 13572136 51.74 %
NonRefCpG 356075 121769 34.20 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54768_3_lane_gembs_coverage_refCpG.png ./IMG//A54768_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54768_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54768_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54768_3_lane_gembs_quality_refcpg.png ./IMG//A54768_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54768_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5485381 11.44 % 1564060 5.33 % 159831 24.89 % 31089 10.07 %
Intermediate (0.3-0.7) 11992999 25.02 % 5537781 18.88 % 170633 26.57 % 65103 21.08 %
Methylated (0.7-1) 30450272 63.53 % 22227690 75.79 % 311806 48.55 % 212648 68.85 %
Median Methylation 0.800 0.860 0.680 0.830