/cemt/A54777_3_lane_gembs

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SAMPLE A54777_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1442235438 100.00 % 721117719 100.00 % 721117719 100.00 %
General Reads 1365649218 94.69 % 683927988 94.84 % 681721230 94.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 50750204 3.52 % 25398698 3.52 % 25351506 3.52 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25836016 1.79 % 11791033 1.64 % 14044983 1.95 %
Bisulfite_reads C2T 718955404 49.85 % 360000273 49.92 % 358955131 49.78 %
Bisulfite_reads G2A 697444018 48.36 % 349326413 48.44 % 348117605 48.27 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 531245602
Average Unique 73.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 71870235415 39.55 % 33094797857 36.42 % 38775437558 42.68 %
Base Counts Overall C 18432945248 10.14 % 752702325 0.83 % 17680242923 19.46 %
Base Counts Overall G 19048313916 10.48 % 17999535572 19.81 % 1048778344 1.15 %
Base Counts Overall T 70903772451 39.02 % 38277734658 42.13 % 32626037793 35.91 %
Base Counts Overall N 1466398158 0.81 % 736062182 0.81 % 730335976 0.80 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.992597235492732
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 602898585



Mapping Quality

Mapping Quality Histogram
A54777_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54777_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7P30ANXX_6_1
C7P30ANXX_5_1
C7JMAANXX_5_1