/cemt/mapping_coverage/A54777_3_lane_gembs
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SAMPLE A54777_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1345279488 |
100% |
146726125949 |
100% |
| Mapped |
1335142540 |
99.25 % |
145459007449 |
99.14 % |
| Passed |
985244788 |
73.24 % |
101721788449 |
69.33 % |
| NotPassed |
349897752 |
26.01 % |
43737219000 |
29.81 % |
| |
|
|
|
|
| LowMAPQ |
274056122 |
20.37 % |
34257015250 |
23.35 % |
| MateUnmapped |
10136948 |
0.75 % |
1267118500 |
0.86 % |
| Duplicate |
20903038 |
1.55 % |
2612879750 |
1.78 % |
| BadOrientation |
1212 |
0.00 % |
151500 |
0.00 % |
| LargeInsertSize |
45558 |
0.00 % |
5694750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
54891822 |
4.08 % |
6861477750 |
4.68 % |
| Unmapped |
10136948 |
0.75 % |
1267118500 |
0.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
123130094750 |
100% |
| Passed |
96845481654 |
78.65 % |
| Trimmed |
4380289283 |
3.56 % |
| Clipped |
293841967 |
0.24 % |
| Overlapping |
21114464334 |
17.15 % |
| LowQuality |
496017512 |
0.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |