/cemt/methylation/A54777_3_lane_gembs

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SAMPLE A54777_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26523886 12688609 47.84 %
NonRefCpG 329115 108308 32.91 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54777_3_lane_gembs_coverage_refCpG.png ./IMG//A54777_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54777_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54777_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54777_3_lane_gembs_quality_refcpg.png ./IMG//A54777_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54777_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8000312 16.05 % 3276600 10.85 % 165138 27.23 % 47105 15.71 %
Intermediate (0.3-0.7) 16460226 33.03 % 8351485 27.67 % 200535 33.06 % 90547 30.21 %
Methylated (0.7-1) 25370692 50.91 % 18559627 61.48 % 240889 39.71 % 162103 54.08 %
Median Methylation 0.700 0.780 0.580 0.730