/cemt/A54778_3_lane_gembs

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SAMPLE A54778_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1439602920 100.00 % 719801460 100.00 % 719801460 100.00 %
General Reads 1376965871 95.65 % 689501824 95.79 % 687464047 95.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 47726489 3.32 % 23887418 3.32 % 23839071 3.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14910560 1.04 % 6412218 0.89 % 8498342 1.18 %
Bisulfite_reads C2T 719973357 50.01 % 360450096 50.08 % 359523261 49.95 %
Bisulfite_reads G2A 704719003 48.95 % 352939146 49.03 % 351779857 48.87 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 555674077
Average Unique 77.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 71886390660 39.63 % 33450200682 36.88 % 38436189978 42.38 %
Base Counts Overall C 18274027098 10.07 % 754997049 0.83 % 17519030049 19.32 %
Base Counts Overall G 18778464224 10.35 % 17801720265 19.63 % 976743959 1.08 %
Base Counts Overall T 70989684744 39.14 % 37955792035 41.85 % 33033892709 36.42 %
Base Counts Overall N 1461401194 0.81 % 732273929 0.81 % 729127265 0.80 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9929494807660315
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 624237024



Mapping Quality

Mapping Quality Histogram
A54778_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54778_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7JMAANXX_6_1
C7P30ANXX_8_1
C7P30ANXX_7_1