/cemt/mapping_coverage/A54778_3_lane_gembs
BACK
SAMPLE A54778_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1355455765 |
100% |
149358505201 |
100% |
| Mapped |
1345168438 |
99.24 % |
148072589326 |
99.14 % |
| Passed |
1032848322 |
76.20 % |
109032574826 |
73.00 % |
| NotPassed |
312320116 |
23.04 % |
39040014500 |
26.14 % |
| |
|
|
|
|
| LowMAPQ |
237568486 |
17.53 % |
29696060750 |
19.88 % |
| MateUnmapped |
10287327 |
0.76 % |
1285915875 |
0.86 % |
| Duplicate |
21906850 |
1.62 % |
2738356250 |
1.83 % |
| BadOrientation |
996 |
0.00 % |
124500 |
0.00 % |
| LargeInsertSize |
26582 |
0.00 % |
3322750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
52817202 |
3.90 % |
6602150250 |
4.42 % |
| Unmapped |
10287327 |
0.76 % |
1285915875 |
0.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
129079916375 |
100% |
| Passed |
103704308695 |
80.34 % |
| Trimmed |
4638548089 |
3.59 % |
| Clipped |
296915333 |
0.23 % |
| Overlapping |
19750426216 |
15.30 % |
| LowQuality |
689718042 |
0.53 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |