/cemt/methylation/A54778_3_lane_gembs

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SAMPLE A54778_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26474359 14592326 55.12 %
NonRefCpG 355982 141297 39.69 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54778_3_lane_gembs_coverage_refCpG.png ./IMG//A54778_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54778_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54778_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54778_3_lane_gembs_quality_refcpg.png ./IMG//A54778_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54778_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5551497 11.25 % 1634357 5.14 % 141841 21.74 % 30559 8.77 %
Intermediate (0.3-0.7) 12479384 25.29 % 6245791 19.65 % 171642 26.31 % 73848 21.19 %
Methylated (0.7-1) 31306896 63.45 % 23904011 75.21 % 338855 51.94 % 244052 70.04 %
Median Methylation 0.800 0.850 0.710 0.830