/CEMT/mapping_coverage/A50431_A50429_4_lane_gembs
BACK
SAMPLE A50431_A50429_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
459673709 |
100% |
49904373450 |
100% |
| Mapped |
455005674 |
98.98 % |
49320869075 |
98.83 % |
| Passed |
336979067 |
73.31 % |
34567543200 |
69.27 % |
| NotPassed |
118026607 |
25.68 % |
14753325875 |
29.56 % |
| |
|
|
|
|
| LowMAPQ |
97523552 |
21.22 % |
12190444000 |
24.43 % |
| MateUnmapped |
4668035 |
1.02 % |
583504375 |
1.17 % |
| Duplicate |
1485946 |
0.32 % |
185743250 |
0.37 % |
| BadOrientation |
198 |
0.00 % |
24750 |
0.00 % |
| LargeInsertSize |
17272 |
0.00 % |
2159000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18999639 |
4.13 % |
2374954875 |
4.76 % |
| Unmapped |
4668035 |
1.02 % |
583504375 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
42099478375 |
100% |
| Passed |
32916041786 |
78.19 % |
| Trimmed |
1486702889 |
3.53 % |
| Clipped |
123132481 |
0.29 % |
| Overlapping |
7408802694 |
17.60 % |
| LowQuality |
164798525 |
0.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |