/CEMT/mapping_coverage/A50428_A50426_4_lane_gembs
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SAMPLE A50428_A50426_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
356754194 |
100% |
42113709477 |
100% |
| Mapped |
353834656 |
99.18 % |
41748767227 |
99.13 % |
| Passed |
304567737 |
85.37 % |
35590402352 |
84.51 % |
| NotPassed |
49266919 |
13.81 % |
6158364875 |
14.62 % |
| |
|
|
|
|
| LowMAPQ |
40363012 |
11.31 % |
5045376500 |
11.98 % |
| MateUnmapped |
2919538 |
0.82 % |
364942250 |
0.87 % |
| Duplicate |
848645 |
0.24 % |
106080625 |
0.25 % |
| BadOrientation |
4 |
0.00 % |
500 |
0.00 % |
| LargeInsertSize |
2386 |
0.00 % |
298250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8052872 |
2.26 % |
1006609000 |
2.39 % |
| Unmapped |
2919538 |
0.82 % |
364942250 |
0.87 % |
Base Level Counts
| Bases |
# |
% |
| Total |
38057222500 |
100% |
| Passed |
33977067696 |
89.28 % |
| Trimmed |
1404545143 |
3.69 % |
| Clipped |
86075216 |
0.23 % |
| Overlapping |
2380744932 |
6.26 % |
| LowQuality |
208789513 |
0.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |