/CEMT/A54766_3_lane_gembs

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SAMPLE A54766_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1359670244 100.00 % 679835122 100.00 % 679835122 100.00 %
General Reads 1289083202 94.81 % 644878859 94.86 % 644204343 94.76 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 50610294 3.72 % 25295363 3.72 % 25314931 3.72 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19976748 1.47 % 9660900 1.42 % 10315848 1.52 %
Bisulfite_reads C2T 683866684 50.30 % 342026270 50.31 % 341840414 50.28 %
Bisulfite_reads G2A 655826812 48.23 % 328147952 48.27 % 327678860 48.20 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 470731075
Average Unique 69.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 67082860994 39.16 % 32334320961 37.75 % 34748540033 40.57 %
Base Counts Overall C 17961221266 10.48 % 902653328 1.05 % 17058567938 19.91 %
Base Counts Overall G 18435178036 10.76 % 17274807992 20.17 % 1160370044 1.35 %
Base Counts Overall T 66155243250 38.62 % 34250514490 39.98 % 31904728760 37.25 %
Base Counts Overall N 1683947198 0.98 % 896928601 1.05 % 787018597 0.92 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9894015032702836
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 546617492



Mapping Quality

Mapping Quality Histogram
A54766_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54766_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C8578ANXX_8_2
C7NH9ANXX_7_2
C7PJUANXX_5_2