/CEMT/mapping_coverage/A54766_3_lane_gembs
BACK
SAMPLE A54766_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1264975090 |
100% |
136592578120 |
100% |
| Mapped |
1250412552 |
98.85 % |
134772260870 |
98.67 % |
| Passed |
859807336 |
67.97 % |
85946608870 |
62.92 % |
| NotPassed |
390605216 |
30.88 % |
48825652000 |
35.75 % |
| |
|
|
|
|
| LowMAPQ |
298330738 |
23.58 % |
37291342250 |
27.30 % |
| MateUnmapped |
14562538 |
1.15 % |
1820317250 |
1.33 % |
| Duplicate |
24745656 |
1.96 % |
3093207000 |
2.26 % |
| BadOrientation |
1452 |
0.00 % |
181500 |
0.00 % |
| LargeInsertSize |
92772 |
0.01 % |
11596500 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
67434598 |
5.33 % |
8429324750 |
6.17 % |
| Unmapped |
14562538 |
1.15 % |
1820317250 |
1.33 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107451407250 |
100% |
| Passed |
81776798519 |
76.11 % |
| Trimmed |
3711200461 |
3.45 % |
| Clipped |
519002114 |
0.48 % |
| Overlapping |
20985796266 |
19.53 % |
| LowQuality |
458609890 |
0.43 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |