/CEMT/methylation/A54766_3_lane_gembs

BACK

SAMPLE A54766_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26064158 10187447 39.09 %
NonRefCpG 423979 93108 21.96 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A54766_3_lane_gembs_coverage_refCpG.png ./IMG//A54766_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A54766_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A54766_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A54766_3_lane_gembs_quality_refcpg.png ./IMG//A54766_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A54766_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5390373 11.53 % 1168703 5.06 % 230888 30.55 % 35605 13.09 %
Intermediate (0.3-0.7) 13858301 29.64 % 5072872 21.98 % 223956 29.63 % 68321 25.11 %
Methylated (0.7-1) 27509176 58.83 % 16836429 72.95 % 300877 39.81 % 168171 61.81 %
Median Methylation 0.760 0.840 0.570 0.790