/cemt/A54764_3_lane_gembs

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SAMPLE A54764_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1342108304 100.00 % 671054152 100.00 % 671054152 100.00 %
General Reads 1266600757 94.37 % 633877310 94.46 % 632723447 94.29 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 53139373 3.96 % 26565146 3.96 % 26574227 3.96 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22368174 1.67 % 10611696 1.58 % 11756478 1.75 %
Bisulfite_reads C2T 679199550 50.61 % 339832563 50.64 % 339366987 50.57 %
Bisulfite_reads G2A 640540580 47.73 % 320609893 47.78 % 319930687 47.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 469254791
Average Unique 69.93 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66000937352 39.03 % 31261048123 36.97 % 34739889229 41.09 %
Base Counts Overall C 17905004185 10.59 % 892947068 1.06 % 17012057117 20.12 %
Base Counts Overall G 18462661497 10.92 % 17278463932 20.44 % 1184197565 1.40 %
Base Counts Overall T 65154515762 38.53 % 34312400966 40.58 % 30842114796 36.48 %
Base Counts Overall N 1582527508 0.94 % 807963063 0.96 % 774564445 0.92 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9909300451692126
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 544647524



Mapping Quality

Mapping Quality Histogram
A54764_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A54764_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C7NH9ANXX_5_1
C7PJUANXX_2_1
C7PJUANXX_1_1