/cemt/mapping_coverage/A54764_3_lane_gembs
BACK
SAMPLE A54764_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1244007540 |
100% |
134273583388 |
100% |
| Mapped |
1230358066 |
98.90 % |
132567399138 |
98.73 % |
| Passed |
857105315 |
68.90 % |
85910805263 |
63.98 % |
| NotPassed |
373252751 |
30.00 % |
46656593875 |
34.75 % |
| |
|
|
|
|
| LowMAPQ |
295866230 |
23.78 % |
36983278750 |
27.54 % |
| MateUnmapped |
13649474 |
1.10 % |
1706184250 |
1.27 % |
| Duplicate |
23229352 |
1.87 % |
2903669000 |
2.16 % |
| BadOrientation |
1086 |
0.00 % |
135750 |
0.00 % |
| LargeInsertSize |
68468 |
0.01 % |
8558500 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
54087615 |
4.35 % |
6760951875 |
5.04 % |
| Unmapped |
13649474 |
1.10 % |
1706184250 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107114269875 |
100% |
| Passed |
81771316623 |
76.34 % |
| Trimmed |
3710362418 |
3.46 % |
| Clipped |
439405518 |
0.41 % |
| Overlapping |
20764059094 |
19.38 % |
| LowQuality |
429126222 |
0.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |