{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 58720036, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 56188303, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.69, 
            "paired": 58720036, 
            "paired_qc_failed": 0, 
            "read1": 29360018, 
            "read1_qc_failed": 0, 
            "read2": 29360018, 
            "read2_qc_failed": 0, 
            "paired_properly": 55637199, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 94.75, 
            "with_itself": 55998196, 
            "with_itself_qc_failed": 0, 
            "singletons": 190107, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.32, 
            "diff_chroms": 236896, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 197624996, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 192713678, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.51, 
            "paired": 197624996, 
            "paired_qc_failed": 0, 
            "read1": 98812498, 
            "read1_qc_failed": 0, 
            "read2": 98812498, 
            "read2_qc_failed": 0, 
            "paired_properly": 189183779, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.73, 
            "with_itself": 191730743, 
            "with_itself_qc_failed": 0, 
            "singletons": 982935, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.5, 
            "diff_chroms": 1513270, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 25812122, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 110482, 
            "paired_opt_dupes": 950, 
            "dupes_pct": 0.00428
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 82282989, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 411217, 
            "paired_opt_dupes": 3070, 
            "dupes_pct": 0.004998
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 25811333, 
            "distinct_read_pairs": 25700856, 
            "one_read_pair": 25590769, 
            "two_read_pair": 109697, 
            "NRF": 0.99572, 
            "PBC1": 0.995717, 
            "PBC2": 233.285951
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 82255330, 
            "distinct_read_pairs": 81844454, 
            "one_read_pair": 81439605, 
            "two_read_pair": 399981, 
            "NRF": 0.995005, 
            "PBC1": 0.995053, 
            "PBC2": 203.608684
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 51403280, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 51403280, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 51403280, 
            "paired_qc_failed": 0, 
            "read1": 25701640, 
            "read1_qc_failed": 0, 
            "read2": 25701640, 
            "read2_qc_failed": 0, 
            "paired_properly": 51403280, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 51403280, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 163743544, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 163743544, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 163743544, 
            "paired_qc_failed": 0, 
            "read1": 81871772, 
            "read1_qc_failed": 0, 
            "read2": 81871772, 
            "read2_qc_failed": 0, 
            "paired_properly": 163743544, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 163743544, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 132068, 
        "Np": 0, 
        "N_opt": 132068, 
        "N_consv": 132068, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.228465847468749, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2244924, 
            "argmin_corr": 1500, 
            "min_corr": 0.1968158, 
            "NSC": 1.16081, 
            "RSC": 1.143568
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.536574676735
        }, 
        "rep1-pr1": {
            "FRiP": 0.515735779384
        }, 
        "rep1-pr2": {
            "FRiP": 0.515260697932
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.478182283112
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.130127508984, 
            "auc": 0.494330300993, 
            "ch_div": 0.259846297792, 
            "elbow_pt": 5.85442013749e-267, 
            "jsd": 0.773429190624, 
            "syn_auc": 0.503417694159, 
            "syn_elbow_pt": 0.375541128116, 
            "syn_jsd": 0.497871181132
        }
    ]
}
